PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0019s0141.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 321aa    MW: 35536.4 Da    PI: 6.6504
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0019s0141.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.93.6e-1550139186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +     + ++  ++  qCk++++ ++k+yk +k  +   +s+   ++p+f++l
  Kaladp0019s0141.1.p  50 CWSEAATSVLIDAWGERYLALSRGNLKQKHWKEVADIVsssgeMCGKTPKTDMQCKNRIDTVKKKYKLEKSKMVASASPP-CSWPFFHKL 138
                          7***************************************999999************************9999874444.47******9 PP

             trihelix  86 e 86 
                          e
  Kaladp0019s0141.1.p 139 E 139
                          7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-2348140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0048831Biological Processregulation of shoot system development
GO:0005730Cellular Componentnucleolus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEDYDDDDDT PTPDPNDGRI TVSLAADAVS ADHLAHNAKP SSGGGAREDC WSEAATSVLI  60
DAWGERYLAL SRGNLKQKHW KEVADIVSSS GEMCGKTPKT DMQCKNRIDT VKKKYKLEKS  120
KMVASASPPC SWPFFHKLEF LIGPAKSPAP TRTHSNLHNT FKKQQQQPAR QDSDSSETDS  180
PDSPDSTDTD PPKPAKKQRF NHPISTATSQ PNGKMNINPR GGSSSVGDLT EAILNLAQVY  240
EQAENAKLRL VVDMEKNRMN FTKELESQRM QLFMKTQMEI TQMKESAMRD SGHNHLHSQL  300
HKSETNLISN NIDNHTSDST *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072765.12e-73PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9SYG21e-46ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBLA0A067L9903e-72A0A067L990_JATCU; Uncharacterized protein
STRINGPGSC0003DMT4000884017e-66(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-45sequence-specific DNA binding transcription factors